97 lines
5.5 KiB
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97 lines
5.5 KiB
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@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
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@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
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@prefix bibo: <http://purl.org/ontology/bibo/> .
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@prefix cito: <http://purl.org/spar/cito/> .
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@prefix dc: <http://purl.org/dc/elements/1.1/> .
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@prefix dwc: <http://rs.tdwg.org/dwc/terms/> .
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@prefix dwcFP: <http://filteredpush.org/ontologies/oa/dwcFP#> .
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@prefix fabio: <http://purl.org/spar/fabio/> .
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@prefix trt: <http://plazi.org/vocab/treatment#> .
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@prefix xlink: <http://www.w3.org/1999/xlink/> .
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<http://treatment.plazi.org/id/8D608791DF611361FFCD2944FF78B2C5>
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cito:cites <http://dx.doi.org/10.5281/zenodo.8291748>, <http://dx.doi.org/10.5281/zenodo.8291738>, <http://dx.doi.org/10.5281/zenodo.8291750> ;
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dc:creator "Miller, Justin C.; Hollatz, Allison J.; Schuler, Mary A." ;
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dc:title "Catharanthus" ;
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trt:publishedIn <http://dx.doi.org/10.1016/j.phytochem.2020.112626> ;
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trt:treatsTaxonName <http://taxon-name.plazi.org/id/Plantae/Catharanthus> ;
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a trt:Treatment .
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<http://dx.doi.org/10.1016/j.phytochem.2020.112626>
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bibo:endPage "13" ;
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bibo:journal "Phytochemistry" ;
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bibo:pubDate "2021-03-31" ;
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bibo:series "112626" ;
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bibo:startPage "1" ;
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bibo:volume "183" ;
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dc:creator "Miller, Justin C.; Hollatz, Allison J.; Schuler, Mary A." ;
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dc:date "2021" ;
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dc:title "P 450 variations bifurcate the early terpene indole alkaloid pathway in Catharanthus roseus and Camptotheca acuminata" ;
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fabio:hasPart <http://dx.doi.org/10.5281/zenodo.8291748>, <http://dx.doi.org/10.5281/zenodo.8291738>, <http://dx.doi.org/10.5281/zenodo.8291750> ;
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a fabio:JournalArticle .
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<http://taxon-name.plazi.org/id/Plantae/Catharanthus>
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dwc:class "Magnoliopsida" ;
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dwc:family "Apocynaceae" ;
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dwc:genus "Catharanthus" ;
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dwc:kingdom "Plantae" ;
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dwc:order "Gentianales" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "genus" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae/Apocynaceae> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae/Apocynaceae>
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dwc:class "Magnoliopsida" ;
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dwc:family "Apocynaceae" ;
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dwc:kingdom "Plantae" ;
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dwc:order "Gentianales" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "family" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae/Gentianales> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae/Gentianales>
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dwc:class "Magnoliopsida" ;
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dwc:kingdom "Plantae" ;
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dwc:order "Gentianales" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "order" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae/Magnoliopsida> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae/Magnoliopsida>
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dwc:class "Magnoliopsida" ;
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dwc:kingdom "Plantae" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "class" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae/Tracheophyta> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae/Tracheophyta>
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dwc:kingdom "Plantae" ;
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dwc:phylum "Tracheophyta" ;
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dwc:rank "phylum" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Plantae> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Plantae>
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dwc:kingdom "Plantae" ;
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dwc:rank "kingdom" ;
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a dwcFP:TaxonName .
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<http://dx.doi.org/10.5281/zenodo.8291748>
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dc:description "Fig. 7. Molecular models of Catharanthus CYP72A1 and Camptotheca CYP72A564 and CYP72A565. (A) Backbone overlays of Catharanthus CYP72A1 and Camptotheca CYP72A564 and CYP72A565 models are shown with the alpha-carbon RMSD amongst CYP72A1, CYP72A564 and CYP72A565 depicted from green (0.0 Å) to yellow (3.0 Å) to red (4.5 Å). (B) SRS regions in CYP72A proteins shown with predicted substrate contact residues (gray fill). (C) Identical versus (D) different side chain residues predicted within 4.5 Å of loganin (aqua) docked in Catharanthus CYP72A1 (blue) and loganic acid (gray) docked in Camptotheca CYP72A564 (orange). (E) Identical versus (F) different side chain residues predicted within 4.5 Å of loganin (aqua) docked in Catharanthus CYP72A1 (blue) and loganic acid (gray) docked in Camptotheca CYP72A565 (rose)." ;
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fabio:hasRepresentation <https://zenodo.org/record/8291748/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.8291738>
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dc:description "Fig. 2. CYP72A multiple sequence alignment. Signal anchor domain fusion of CYP72A565 into CYP72A564 is underlined; SRS regions are underlined in bold; predicted substrate contacts within 4.5 Å of loganic acid/loganin are gray-filled." ;
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fabio:hasRepresentation <https://zenodo.org/record/8291738/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.8291750>
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dc:description "Fig. 8. Molecular models of Camptotheca CYP72A564, CYP72A565 and CYP72A730. (A) Backbone overlays of Camptotheca CYP72A730, CYP72A564 and CYP72A565 models are shown with the RMSD variance of CYP72A564 and CYP72A565 from the CYP72A730 backbone depicted in green (0.0 Å), yellow (3.0 Å) and red (4.5 Å). (B) SRS regions in CYP72A proteins shown with predicted substrate contact residues (gray fill). (C) Identical versus (D) different side chain residues predicted within 4.5 Å of loganic acid (gray) docked in Camptotheca CYP72A564 (orange) versus loganic acid (aqua) docked in CYP72A730 (magenta). (E) Identical versus (F) different side chain residues predicted within 4.5 Å of loganic acid (gray) docked in Camptotheca CYP72A565 (rose) versus loganic acid (aqua) docked in CYP72A730 (magenta)." ;
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fabio:hasRepresentation <https://zenodo.org/record/8291750/files/figure.png> ;
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a fabio:Figure .
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