136 lines
7.3 KiB
Turtle
136 lines
7.3 KiB
Turtle
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
|
|
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
|
|
@prefix bibo: <http://purl.org/ontology/bibo/> .
|
|
@prefix cito: <http://purl.org/spar/cito/> .
|
|
@prefix dc: <http://purl.org/dc/elements/1.1/> .
|
|
@prefix dwc: <http://rs.tdwg.org/dwc/terms/> .
|
|
@prefix dwcFP: <http://filteredpush.org/ontologies/oa/dwcFP#> .
|
|
@prefix fabio: <http://purl.org/spar/fabio/> .
|
|
@prefix trt: <http://plazi.org/vocab/treatment#> .
|
|
# Warning: Failed to output a material citation, could not create identifier
|
|
|
|
<http://treatment.plazi.org/id/CD6F3526FFC9252A477EFF6BFE3223A8>
|
|
cito:cites <http://dx.doi.org/10.5281/zenodo.6048749>, <http://dx.doi.org/10.5281/zenodo.6048753> ;
|
|
dc:creator "Li, Fuyong; Cheng, Christopher C.; Zheng, Jinshui; Liu, Junhong; Quevedo, Rodrigo Margain; Li, Junjie; Roos, Stefan; Gänzle, Michael G.; Walter, Jens" ;
|
|
dc:title "Limosilactobacillus reuteri SUBSP. MURIUM 2021, SUBSP. NOV." ;
|
|
trt:definesTaxonConcept <http://taxon-concept.plazi.org/id/Bacteria/Limosilactobacillus_reuteri_Murium_2021> ;
|
|
trt:deprecates <http://taxon-concept.plazi.org/id/Bacteria/Limosilactobacillus_reuteri_murium_Li_2021> ;
|
|
trt:publishedIn <http://dx.doi.org/10.1099/ijsem.0.004644> ;
|
|
a trt:Treatment .
|
|
|
|
<http://dx.doi.org/10.1099/ijsem.0.004644>
|
|
bibo:endPage "21" ;
|
|
bibo:issue "2" ;
|
|
bibo:journal "International Journal of Systematic and Evolutionary Microbiology" ;
|
|
bibo:pubDate "2021-02-01" ;
|
|
bibo:series "004644" ;
|
|
bibo:startPage "1" ;
|
|
bibo:volume "71" ;
|
|
dc:creator "Li, Fuyong; Cheng, Christopher C.; Zheng, Jinshui; Liu, Junhong; Quevedo, Rodrigo Margain; Li, Junjie; Roos, Stefan; Gänzle, Michael G.; Walter, Jens" ;
|
|
dc:date "2021" ;
|
|
dc:title "Limosilactobacillus balticus sp. nov., Limosilactobacillus agrestis sp. nov., Limosilactobacillus albertensis sp. nov., Limosilactobacillus rudii sp. nov. and Limosilactobacillus fastidiosus sp. nov., five novel Limosilactobacillus species isolated from the vertebrate gastrointestinal tract, and proposal of six subspecies of Limosilactobacillus reuteri adapted to the gastrointestinal tract of specific vertebrate hosts" ;
|
|
fabio:hasPart <http://dx.doi.org/10.5281/zenodo.6048749>, <http://dx.doi.org/10.5281/zenodo.6048753> ;
|
|
a fabio:JournalArticle .
|
|
|
|
<http://taxon-concept.plazi.org/id/Bacteria/Limosilactobacillus_reuteri_Murium_2021>
|
|
dwc:authority "SUBSP. MURIUM" ;
|
|
dwc:authorityName "SUBSP. MURIUM" ;
|
|
dwc:authorityYear "2021" ;
|
|
dwc:class "Bacilli" ;
|
|
dwc:family "Lactobacillaceae" ;
|
|
dwc:genus "Limosilactobacillus" ;
|
|
dwc:kingdom "Bacteria" ;
|
|
dwc:order "Lactobacillales" ;
|
|
dwc:phylum "Firmicutes" ;
|
|
dwc:rank "species" ;
|
|
dwc:scientificNameAuthorship "SUBSP. Murium, 2021" ;
|
|
dwc:species "reuteri" ;
|
|
trt:hasTaxonName <http://taxon-name.plazi.org/id/Bacteria/Limosilactobacillus_reuteri> ;
|
|
a dwcFP:TaxonConcept .
|
|
|
|
<http://taxon-concept.plazi.org/id/Bacteria/Limosilactobacillus_reuteri_murium_Li_2021>
|
|
dwc:authorityName "Li & Cheng & Zheng & Liu & Quevedo & Li & Roos & Gänzle & Walter" ;
|
|
dwc:authorityYear "2021" ;
|
|
dwc:class "Bacilli" ;
|
|
dwc:family "Lactobacillaceae" ;
|
|
dwc:genus "Limosilactobacillus" ;
|
|
dwc:kingdom "Bacteria" ;
|
|
dwc:order "Lactobacillales" ;
|
|
dwc:phylum "Firmicutes" ;
|
|
dwc:rank "subSpecies" ;
|
|
dwc:scientificNameAuthorship "Li, Cheng, Zheng, Liu, Quevedo, Li, Roos, Gänzle & Walter, 2021" ;
|
|
dwc:species "reuteri" ;
|
|
dwc:subSpecies "murium" ;
|
|
trt:hasTaxonName <http://taxon-name.plazi.org/id/Bacteria/Limosilactobacillus_reuteri_murium> ;
|
|
a dwcFP:TaxonConcept .
|
|
|
|
<http://taxon-name.plazi.org/id/Bacteria/Limosilactobacillus_reuteri>
|
|
dwc:class "Bacilli" ;
|
|
dwc:family "Lactobacillaceae" ;
|
|
dwc:genus "Limosilactobacillus" ;
|
|
dwc:kingdom "Bacteria" ;
|
|
dwc:order "Lactobacillales" ;
|
|
dwc:phylum "Firmicutes" ;
|
|
dwc:rank "species" ;
|
|
dwc:species "reuteri" ;
|
|
trt:hasParentName <http://taxon-name.plazi.org/id/Bacteria/Limosilactobacillus> ;
|
|
a dwcFP:TaxonName .
|
|
|
|
<http://taxon-name.plazi.org/id/Bacteria/Limosilactobacillus>
|
|
dwc:genus "Limosilactobacillus" ;
|
|
dwc:rank "genus" ;
|
|
trt:hasParentName <http://taxon-name.plazi.org/id/Bacteria/Lactobacillaceae> ;
|
|
a dwcFP:TaxonName .
|
|
|
|
<http://taxon-name.plazi.org/id/Bacteria/Lactobacillaceae>
|
|
dwc:family "Lactobacillaceae" ;
|
|
dwc:rank "family" ;
|
|
trt:hasParentName <http://taxon-name.plazi.org/id/Bacteria/Lactobacillales> ;
|
|
a dwcFP:TaxonName .
|
|
|
|
<http://taxon-name.plazi.org/id/Bacteria/Lactobacillales>
|
|
dwc:order "Lactobacillales" ;
|
|
dwc:rank "order" ;
|
|
trt:hasParentName <http://taxon-name.plazi.org/id/Bacteria/Bacilli> ;
|
|
a dwcFP:TaxonName .
|
|
|
|
<http://taxon-name.plazi.org/id/Bacteria/Bacilli>
|
|
dwc:class "Bacilli" ;
|
|
dwc:rank "class" ;
|
|
trt:hasParentName <http://taxon-name.plazi.org/id/Bacteria/Firmicutes> ;
|
|
a dwcFP:TaxonName .
|
|
|
|
<http://taxon-name.plazi.org/id/Bacteria/Firmicutes>
|
|
dwc:phylum "Firmicutes" ;
|
|
dwc:rank "phylum" ;
|
|
trt:hasParentName <http://taxon-name.plazi.org/id/Bacteria> ;
|
|
a dwcFP:TaxonName .
|
|
|
|
<http://taxon-name.plazi.org/id/Bacteria>
|
|
dwc:kingdom "Bacteria" ;
|
|
dwc:rank "kingdom" ;
|
|
a dwcFP:TaxonName .
|
|
|
|
<http://taxon-name.plazi.org/id/Bacteria/Limosilactobacillus_reuteri_murium>
|
|
dwc:class "Bacilli" ;
|
|
dwc:family "Lactobacillaceae" ;
|
|
dwc:genus "Limosilactobacillus" ;
|
|
dwc:kingdom "Bacteria" ;
|
|
dwc:order "Lactobacillales" ;
|
|
dwc:phylum "Firmicutes" ;
|
|
dwc:rank "subSpecies" ;
|
|
dwc:species "reuteri" ;
|
|
dwc:subSpecies "murium" ;
|
|
trt:hasParentName <http://taxon-name.plazi.org/id/Bacteria/Limosilactobacillus_reuteri> ;
|
|
a dwcFP:TaxonName .
|
|
|
|
<http://dx.doi.org/10.5281/zenodo.6048749>
|
|
dc:description "Fig. 3. A maximum-likelihood phylogenetic tree reconstructed using core genes (n=100) identified from whole-genome sequences, showing the evolutionary relationships among six L. reuteri subspecies.The tree was reconstructed using 33 L. reuteri genomes available in public databases (n=6 for L. reuteri subsp. kinnaridis, n=2 for L. reuteri subsp. porcinus, n=5 for L. reuteri subsp. murium, n=10 for L. reuteri subsp. reuteri, n=5 for L. reuteri subsp. suis and n=5 for L. reuteri subsp. rodentium) and L. balticus BG-AF3-AT was used as an outgroup. Further information on the involved genome sequences is listed in Table S1. The tree was inferred based on the GTR+G model with 1000 bootstrap replicates and only bootstrap values above 60% are shown. The tree was drawn with iTOL [54]." ;
|
|
fabio:hasRepresentation <https://zenodo.org/record/6048749/files/figure.png> ;
|
|
a fabio:Figure .
|
|
|
|
<http://dx.doi.org/10.5281/zenodo.6048753>
|
|
dc:description "Fig. 4. Pairwise average nucleotide identity values (ANI; %) of genome sequences belonging to the same or different L. reuteri subspecies. ANI values within the same subspecies and between different subspecies were calculated for 33 L. reuteri genomes available in public databases (n=6 for L. reuteri subsp. kinnaridis, n=2 for L. reuteri subsp. porcinus, n=5 for L. reuteri subsp.murium, n=10for L. reuteri subsp.reuteri, n=5 for L. reuteri subsp. suis and n=5 for L. reuteri subsp. rodentium). Further information on the involved genome sequences is listed in Table S1." ;
|
|
fabio:hasRepresentation <https://zenodo.org/record/6048753/files/figure.png> ;
|
|
a fabio:Figure .
|