114 lines
6.1 KiB
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114 lines
6.1 KiB
Turtle
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
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@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
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@prefix bibo: <http://purl.org/ontology/bibo/> .
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@prefix cito: <http://purl.org/spar/cito/> .
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@prefix dc: <http://purl.org/dc/elements/1.1/> .
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@prefix dwc: <http://rs.tdwg.org/dwc/terms/> .
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@prefix dwcFP: <http://filteredpush.org/ontologies/oa/dwcFP#> .
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@prefix fabio: <http://purl.org/spar/fabio/> .
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@prefix trt: <http://plazi.org/vocab/treatment#> .
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@prefix xlink: <http://www.w3.org/1999/xlink/> .
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<http://treatment.plazi.org/id/7A08A36B1D57FFAA07AE0BD33719FAAF>
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cito:cites <http://dx.doi.org/10.5281/zenodo.8389173>, <http://dx.doi.org/10.5281/zenodo.8389171> ;
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dc:creator "Lei, Yiming; Yang, Erfu; Dao, Chengjiao; Li, Xi; Karunarathna, Samantha C.; Tibpromma, Saowaluck; Yan, Kai" ;
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dc:title "Epicoccum nigrum Link, Mag. Ges. Naturf. Freunde Berlin" ;
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dwc:basisOfRecord <http://tb.plazi.org/GgServer/dwcaRecords/7A08A36B1D57FFAA07AE0BD33719FAAF.mc.42C918201D57FFAA068909DB36E8FB86> ;
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trt:augmentsTaxonConcept <http://taxon-concept.plazi.org/id/Fungi/Epicoccum_nigrum_Link_> ;
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trt:publishedIn <http://dx.doi.org/10.11646/phytotaxa.616.1.2> ;
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a trt:Treatment .
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<http://dx.doi.org/10.11646/phytotaxa.616.1.2>
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bibo:endPage "46" ;
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bibo:issue "1" ;
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bibo:journal "Phytotaxa" ;
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bibo:pubDate "2023-09-21" ;
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bibo:startPage "27" ;
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bibo:volume "616" ;
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dc:creator "Lei, Yiming; Yang, Erfu; Dao, Chengjiao; Li, Xi; Karunarathna, Samantha C.; Tibpromma, Saowaluck; Yan, Kai" ;
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dc:date "2023" ;
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dc:title "Endophytic fungi associated with Coriaria nepalensis in an abandoned open-pit phosphate mine in Yunnan, P. R. China" ;
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fabio:hasPart <http://dx.doi.org/10.5281/zenodo.8389173>, <http://dx.doi.org/10.5281/zenodo.8389171> ;
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a fabio:JournalArticle .
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<http://taxon-concept.plazi.org/id/Fungi/Epicoccum_nigrum_Link_>
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dwc:authority "Link, Mag. Ges. Naturf. Freunde Berlin" ;
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dwc:class "Sordariomycetes" ;
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dwc:family "Apiosporaceae" ;
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dwc:genus "Epicoccum" ;
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dwc:kingdom "Fungi" ;
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dwc:phylum "Ascomycota" ;
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dwc:rank "species" ;
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dwc:scientificNameAuthorship "Link, Mag. Ges. Naturf. Freunde Berlin" ;
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dwc:species "nigrum" ;
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trt:hasTaxonName <http://taxon-name.plazi.org/id/Fungi/Epicoccum_nigrum> ;
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a dwcFP:TaxonConcept .
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<http://taxon-name.plazi.org/id/Fungi/Epicoccum_nigrum>
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dwc:class "Sordariomycetes" ;
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dwc:family "Apiosporaceae" ;
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dwc:genus "Epicoccum" ;
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dwc:kingdom "Fungi" ;
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dwc:phylum "Ascomycota" ;
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dwc:rank "species" ;
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dwc:species "nigrum" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Fungi/Epicoccum> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Fungi/Epicoccum>
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dwc:class "Sordariomycetes" ;
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dwc:family "Apiosporaceae" ;
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dwc:genus "Epicoccum" ;
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dwc:kingdom "Fungi" ;
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dwc:phylum "Ascomycota" ;
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dwc:rank "genus" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Fungi/Apiosporaceae> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Fungi/Apiosporaceae>
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dwc:class "Sordariomycetes" ;
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dwc:family "Apiosporaceae" ;
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dwc:kingdom "Fungi" ;
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dwc:phylum "Ascomycota" ;
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dwc:rank "family" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Fungi/Sordariomycetes> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Fungi/Sordariomycetes>
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dwc:class "Sordariomycetes" ;
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dwc:kingdom "Fungi" ;
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dwc:phylum "Ascomycota" ;
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dwc:rank "class" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Fungi/Ascomycota> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Fungi/Ascomycota>
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dwc:kingdom "Fungi" ;
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dwc:phylum "Ascomycota" ;
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dwc:rank "phylum" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Fungi> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Fungi>
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dwc:kingdom "Fungi" ;
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dwc:rank "kingdom" ;
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a dwcFP:TaxonName .
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<http://dx.doi.org/10.5281/zenodo.8389173>
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dc:description "FIGURE 8. Epicoccum nigrum (HKAS 129062). (a,b) Obverse and reverse of colony on PDA; (a–b) Close up of the fruiting bodies on PDA; (e,f) Conidiogenous cells bearing conidia; (g) Mycelium; (h–m) Conidia." ;
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fabio:hasRepresentation <https://zenodo.org/record/8389173/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.8389171>
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dc:description "FIGURE 7. Phylogram generated from Maximum Likelihood analysis based on a combined LSU, ITS, rpb2 and tub2 sequence datasets. The 71 strains are included in the combined gene analysis 2414 total character including gaps (LSU: 1–970 bp, ITS: 971–1476 bp, rpb2: 1477–2076 bp, tub2: 2077–2414 bp). Tree topology of the ML analysis was similar to the BI. The matrix had distinct alignment patterns, with the final ML optimization likelihood value of -10985.830126 (ln).All free model parameters were estimated by RAxML model, with 591 distinct alignment patterns and 9.91% of undetermined characters or gaps. Estimated base frequencies were as follows:A = 0.239938, C = 0.243524, G = 0.275052, T = 0.241487, with substitution rates AC = 1.455735, AG = 5.319539, AT = 1.539293, CG = 1.013949, CT = 11.131040, GT = 1.000000. The gamma distribution shape parameter alpha = 0.665812 and the Tree-Length = 0.755110. The final average standard deviation of split frequencies at the end of total MCMC generations was calculated as 0.009112 in BI analysis. The species introduced in this study are indicated in red, and the type strains are indicated in bold. Bootstrap values greater than 60% (ML, Left) and Bayesian posterior probabilities (BI, right) greater than 0.95 are given at the nodes. Hypens (-) represent values less than 60% in ML/0.95 in BI." ;
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fabio:hasRepresentation <https://zenodo.org/record/8389171/files/figure.png> ;
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a fabio:Figure .
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<http://tb.plazi.org/GgServer/dwcaRecords/7A08A36B1D57FFAA07AE0BD33719FAAF.mc.42C918201D57FFAA068909DB36E8FB86>
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dwc:catalogNumber "MS1, L2, HKAS 129062, KUNCC23- 13352, OR094462, OR094457" ;
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dwc:collectionCode "C, J, ITS, LSU" ;
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dwc:eventDate "2022-08-22" ;
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dwc:locality "Open-Pit Phosphate Mine" ;
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trt:httpUri <https://treatment.plazi.org/id/7A08A36B1D57FFAA07AE0BD33719FAAF#42C918201D57FFAA068909DB36E8FB86> ;
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a dwc:MaterialCitation .
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