130 lines
6.7 KiB
Turtle
130 lines
6.7 KiB
Turtle
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
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@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
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@prefix bibo: <http://purl.org/ontology/bibo/> .
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@prefix cito: <http://purl.org/spar/cito/> .
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@prefix dc: <http://purl.org/dc/elements/1.1/> .
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@prefix dwc: <http://rs.tdwg.org/dwc/terms/> .
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@prefix dwcFP: <http://filteredpush.org/ontologies/oa/dwcFP#> .
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@prefix fabio: <http://purl.org/spar/fabio/> .
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@prefix trt: <http://plazi.org/vocab/treatment#> .
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@prefix xlink: <http://www.w3.org/1999/xlink/> .
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<http://treatment.plazi.org/id/7A08A36B1D52FFAD07AE0E3C33F9FE03>
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cito:cites <http://dx.doi.org/10.5281/zenodo.8389169>, <http://dx.doi.org/10.5281/zenodo.8389167> ;
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dc:creator "Lei, Yiming; Yang, Erfu; Dao, Chengjiao; Li, Xi; Karunarathna, Samantha C.; Tibpromma, Saowaluck; Yan, Kai" ;
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dc:title "Chaetomium cochliodes Palliser" ;
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dwc:basisOfRecord <http://tb.plazi.org/GgServer/dwcaRecords/7A08A36B1D52FFAD07AE0E3C33F9FE03.mc.42C918201D52FFAF06890CCC36C4FE9C> ;
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trt:augmentsTaxonConcept <http://taxon-concept.plazi.org/id/Fungi/Chaetomium_cochliodes_Palliser_> ;
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trt:publishedIn <http://dx.doi.org/10.11646/phytotaxa.616.1.2> ;
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a trt:Treatment .
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<http://dx.doi.org/10.11646/phytotaxa.616.1.2>
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bibo:endPage "46" ;
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bibo:issue "1" ;
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bibo:journal "Phytotaxa" ;
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bibo:pubDate "2023-09-21" ;
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bibo:startPage "27" ;
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bibo:volume "616" ;
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dc:creator "Lei, Yiming; Yang, Erfu; Dao, Chengjiao; Li, Xi; Karunarathna, Samantha C.; Tibpromma, Saowaluck; Yan, Kai" ;
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dc:date "2023" ;
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dc:title "Endophytic fungi associated with Coriaria nepalensis in an abandoned open-pit phosphate mine in Yunnan, P. R. China" ;
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fabio:hasPart <http://dx.doi.org/10.5281/zenodo.8389169>, <http://dx.doi.org/10.5281/zenodo.8389167> ;
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a fabio:JournalArticle .
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<http://taxon-concept.plazi.org/id/Fungi/Chaetomium_cochliodes_Palliser_>
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dwc:ID-ENA "904709" ;
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dwc:authority "Palliser" ;
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dwc:authorityName "Palliser" ;
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dwc:class "Sordariomycetes" ;
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dwc:family "Chaetomiaceae" ;
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dwc:genus "Chaetomium" ;
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dwc:kingdom "Fungi" ;
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dwc:order "Sordariales" ;
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dwc:phylum "Ascomycota" ;
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dwc:rank "species" ;
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dwc:scientificNameAuthorship "Palliser" ;
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dwc:species "cochliodes" ;
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rdfs:seeAlso <https://www.catalogueoflife.org/data/taxon/5XPDN> ;
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trt:hasTaxonName <http://taxon-name.plazi.org/id/Fungi/Chaetomium_cochliodes> ;
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a dwcFP:TaxonConcept .
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<http://taxon-name.plazi.org/id/Fungi/Chaetomium_cochliodes>
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dwc:class "Sordariomycetes" ;
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dwc:family "Chaetomiaceae" ;
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dwc:genus "Chaetomium" ;
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dwc:kingdom "Fungi" ;
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dwc:order "Sordariales" ;
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dwc:phylum "Ascomycota" ;
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dwc:rank "species" ;
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dwc:species "cochliodes" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Fungi/Chaetomium> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Fungi/Chaetomium>
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dwc:class "Sordariomycetes" ;
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dwc:family "Chaetomiaceae" ;
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dwc:genus "Chaetomium" ;
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dwc:kingdom "Fungi" ;
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dwc:order "Sordariales" ;
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dwc:phylum "Ascomycota" ;
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dwc:rank "genus" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Fungi/Chaetomiaceae> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Fungi/Chaetomiaceae>
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dwc:class "Sordariomycetes" ;
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dwc:family "Chaetomiaceae" ;
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dwc:kingdom "Fungi" ;
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dwc:order "Sordariales" ;
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dwc:phylum "Ascomycota" ;
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dwc:rank "family" ;
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dwc:class "Sordariomycetes" ;
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dwc:kingdom "Fungi" ;
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dwc:order "Sordariales" ;
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dwc:phylum "Ascomycota" ;
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<http://taxon-name.plazi.org/id/Fungi/Sordariomycetes>
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dwc:class "Sordariomycetes" ;
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dwc:kingdom "Fungi" ;
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dwc:phylum "Ascomycota" ;
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dwc:rank "class" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Fungi/Ascomycota> ;
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a dwcFP:TaxonName .
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dwc:kingdom "Fungi" ;
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dwc:phylum "Ascomycota" ;
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dwc:rank "phylum" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Fungi> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Fungi>
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dwc:kingdom "Fungi" ;
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dwc:rank "kingdom" ;
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a dwcFP:TaxonName .
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<http://dx.doi.org/10.5281/zenodo.8389169>
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dc:description "FIGURE 6. Chaetomium cochliodes (HKAS 129064). (a,e) Obverse and reverse of colonies on PDA; (b–d) Close up of the fruiting bodies on PDA; (f,g) Ascomata; (h) Asci; (i)Asci stained by the congo red reagents; (j, k) Setae; (l) Immature ascospores stained by congo red reagent; (m, n) Ascospores." ;
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fabio:hasRepresentation <https://zenodo.org/record/8389169/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.8389167>
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dc:description "FIGURE 5. Phylogram generated from Maximum Likelihood analysis based on a combined LSU, ITS, rpb2 and tub2 sequence datasets. The 70 strains are included in the combined gene analysis 2460 total character including gaps (LSU: 1–590 bp, ITS: 591–1128 bp, rpb2: 1129–1730 bp, tub2: 1731–2460 bp). Tree topology of the ML analysis was similar to the BI. The matrix had distinct alignment patterns, with the final ML optimization likelihood value of -13768.250026 (ln). All free model parameters were estimated by RAxML model, with 828 distinct alignment patterns and 11.11% of undetermined characters or gaps. Estimated base frequencies were as follows: A = 0.236385, C =0.275681, G = 0.277948, T = 0.209986, with substitution rates AC = 1.091927, AG = 4.082662, AT = 1.184028, CG = 1.265089, CT = 7.046047, GT = 1.000000. The gamma distribution shape parameter alpha = 0.760807 and the Tree-Length = 1.234745. The final average standard deviation of split frequencies at the end of total MCMC generations was calculated as 0.009913 in BI analysis. The species introduced in this study are indicated in red, and the type strains are indicated in bold. Bootstrap values greater than 60% (ML, Left) and Bayesian posterior probabilities (BI, right) greater than 0.95 are given at the nodes. Hypens (-) represent values less than 60% in ML/0.95 in BI." ;
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fabio:hasRepresentation <https://zenodo.org/record/8389167/files/figure.png> ;
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a fabio:Figure .
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<http://tb.plazi.org/GgServer/dwcaRecords/7A08A36B1D52FFAD07AE0E3C33F9FE03.mc.42C918201D52FFAF06890CCC36C4FE9C>
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dwc:catalogNumber "MS5, L2, HKAS 129064, KUNCC23- 13353, OR094463, OR094458" ;
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dwc:collectionCode "C, J, ITS, LSU" ;
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dwc:eventDate "2022-08-22" ;
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dwc:locality "Open-Pit Phosphate Mine" ;
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trt:httpUri <https://treatment.plazi.org/id/7A08A36B1D52FFAD07AE0E3C33F9FE03#42C918201D52FFAF06890CCC36C4FE9C> ;
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a dwc:MaterialCitation .
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