152 lines
11 KiB
Turtle
152 lines
11 KiB
Turtle
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
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@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
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@prefix bibo: <http://purl.org/ontology/bibo/> .
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@prefix cito: <http://purl.org/spar/cito/> .
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@prefix dc: <http://purl.org/dc/elements/1.1/> .
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@prefix dwc: <http://rs.tdwg.org/dwc/terms/> .
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@prefix dwcFP: <http://filteredpush.org/ontologies/oa/dwcFP#> .
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@prefix fabio: <http://purl.org/spar/fabio/> .
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@prefix trt: <http://plazi.org/vocab/treatment#> .
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@prefix xlink: <http://www.w3.org/1999/xlink/> .
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<http://treatment.plazi.org/id/03D087F0FF83FFECFE41FCF3461FFB35>
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cito:cites <http://dx.doi.org/10.5281/zenodo.3897582>, <http://dx.doi.org/10.5281/zenodo.3897586>, <http://dx.doi.org/10.5281/zenodo.3897588>, <http://dx.doi.org/10.5281/zenodo.3897590>, <http://dx.doi.org/10.5281/zenodo.3897592> ;
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dc:creator "Mary Higby Schweitzer; Wenxia Zheng; Lindsay Zanno; Sarah Werning; Toshie Sugiyama" ;
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dc:title "Tyrannosaurus rex Osborn 1905" ;
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dwc:basisOfRecord <https://www.gbif.org/occurrence/2636228303>, <https://www.gbif.org/occurrence/2636228301>, <https://www.gbif.org/occurrence/2636228302> ;
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trt:augmentsTaxonConcept <http://taxon-concept.plazi.org/id/Animalia/Tyrannosaurus_rex_Osborn_1905> ;
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trt:publishedIn <http://dx.doi.org/10.1038/srep23099> ;
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a trt:Treatment .
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<http://dx.doi.org/10.1038/srep23099>
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bibo:endPage "23099" ;
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bibo:journal "Scientific Reports" ;
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bibo:pubDate "2016-03-15" ;
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bibo:startPage "23099" ;
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bibo:volume "6" ;
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dc:creator "Mary Higby Schweitzer; Wenxia Zheng; Lindsay Zanno; Sarah Werning; Toshie Sugiyama" ;
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dc:date "2016" ;
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dc:title "Chemistry supports the identification of gender-specific reproductive tissue in Tyrannosaurus rex" ;
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fabio:hasPart <http://dx.doi.org/10.5281/zenodo.3897582>, <http://dx.doi.org/10.5281/zenodo.3897586>, <http://dx.doi.org/10.5281/zenodo.3897588>, <http://dx.doi.org/10.5281/zenodo.3897590>, <http://dx.doi.org/10.5281/zenodo.3897592> ;
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a fabio:JournalArticle .
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<http://taxon-concept.plazi.org/id/Animalia/Tyrannosaurus_rex_Osborn_1905>
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dwc:authorityName "Osborn" ;
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dwc:authorityYear "1905" ;
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dwc:class "Reptilia" ;
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dwc:family "Tyrannosauridae" ;
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dwc:genus "Tyrannosaurus" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Dinosauria" ;
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dwc:phylum "Chordata" ;
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dwc:rank "species" ;
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dwc:scientificNameAuthorship "Osborn, 1905" ;
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dwc:species "rex" ;
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trt:hasTaxonName <http://taxon-name.plazi.org/id/Animalia/Tyrannosaurus_rex> ;
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a dwcFP:TaxonConcept .
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<http://taxon-name.plazi.org/id/Animalia/Tyrannosaurus_rex>
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dwc:class "Reptilia" ;
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dwc:family "Tyrannosauridae" ;
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dwc:genus "Tyrannosaurus" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Dinosauria" ;
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dwc:phylum "Chordata" ;
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dwc:rank "species" ;
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dwc:species "rex" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Tyrannosaurus> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Tyrannosaurus>
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dwc:class "Reptilia" ;
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dwc:family "Tyrannosauridae" ;
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dwc:genus "Tyrannosaurus" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Dinosauria" ;
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dwc:phylum "Chordata" ;
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dwc:rank "genus" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Tyrannosauridae> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Tyrannosauridae>
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dwc:class "Reptilia" ;
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dwc:family "Tyrannosauridae" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Dinosauria" ;
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dwc:phylum "Chordata" ;
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dwc:rank "family" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Dinosauria> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Dinosauria>
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dwc:class "Reptilia" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Dinosauria" ;
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dwc:phylum "Chordata" ;
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dwc:rank "order" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Reptilia> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Reptilia>
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dwc:class "Reptilia" ;
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dwc:kingdom "Animalia" ;
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dwc:phylum "Chordata" ;
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dwc:rank "class" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia/Chordata> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia/Chordata>
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dwc:kingdom "Animalia" ;
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dwc:phylum "Chordata" ;
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dwc:rank "phylum" ;
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trt:hasParentName <http://taxon-name.plazi.org/id/Animalia> ;
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a dwcFP:TaxonName .
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<http://taxon-name.plazi.org/id/Animalia>
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dwc:kingdom "Animalia" ;
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dwc:rank "kingdom" ;
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a dwcFP:TaxonName .
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<http://dx.doi.org/10.5281/zenodo.3897582>
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dc:description "Figure 1. Morphological differentiation between MB and CB. (A) Mid shaft section from reproductively active laying hen femur shows textural differences between CB and MB. (B) more proximal region of hen femur shows that trabecular bone (T) can be differentiated from MB in hand sample, and that MB is deposited between trabeculae, infilling trabecular spaces. (C) MB in hand sample of ostrich femur appears to grade from CB, but can be differentiated by color and spiculation, as well as the presence of large erosion rooms (ER, arrows) at the boundary between layers. Infilling of erosion rooms with crystalline MB is also seen (*). (D) Ground section of ostrich at higher magnification shows clear separation of MB and CB. Bone fragment of MOR 1125 femur in (E) cross section and (F) medial, or medullary face orientation shows both textural and color differences between CB and MB, as well as the distinct separation between bone types.(G) Transverse section of MOR 1125 whole femur, showing almost complete infilling of the medullary cavity with MB. No gross deformation (corresponding to fracture callus) or bony expansion (corresponding to osteopetrosis) can be seen. Red line marks boundary between dense cortical bone and endosteal lamellar bone penetrated by multiple erosion rooms. Erosion rooms can be seen extending deep into the cortex in one region of the bone (*). (H) Petrographic ground section of deep CB layer and adjacent, internal MB of MOR 1125, showing change in texture and vascularity.Black arrows show distinct separation between innermost endosteal bone with erosion rooms, and region of MB deposition. Trabeculae (T) of laminar bone can be seen surrounded by MB.Scale bars as indicated." ;
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fabio:hasRepresentation <https://zenodo.org/record/3897582/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.3897586>
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dc:description "Figure 2. Computed tomographic imaging of MOR 1125 femur bone fragment showing morphological differentiation between MB and CB. (A–D) volumetric renderings and (E–G) cross sections. (A,B) High density cortical bone rendered transparent to visually isolate lower density medullary bone. (E) Density shown as spectrum from high (black) to low (white). Fragment is (C,D,G) color and (F) heat mapped.Color mapping key: (C,D,G) medullary bone (orange/red) and cortical bone (beige/yellow); heat mapping key (F): highest density (red) lowest density (blue). Sample shown in (A,C,E–G) cross sectional and (B,D) medial views." ;
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fabio:hasRepresentation <https://zenodo.org/record/3897586/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.3897588>
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dc:description "Figure 3. Alcian blue histochemical stain capitalizes on the differential presence of sulfated glycosaminoglycans found in MB vs CB. Low (A) and high (B) magnification of demineralized, sectioned bone from a laying hen femur show MB (black arrows), forming along the borders of CB. Alcian blue stains MB intensely, but only lightly stains CB and TB, reflecting the differences in matrix composition.MB is shown to form around ovate vacancies that may represent vessels (red arrowheads).MB is sometimes found as islands within spicules of TB or CB (yellow arrows), possibly representing centripetal infilling of pre-existing vessel channels or erosion rooms with forming MB. Ostrich (C), shown at a lower magnification to encompass internal-most cortical bone and developing spicules of MB. The developmental pattern differs from that of chicken, reflecting macroscopic differences seen in hand sample, where MB and CB are not distinct, but more gradational in nature.Forming MB (black arrows) can be seen lining secondary osteons (leftmost black arrow), and as pockets of bone within pre-existing cortical bone (yellow arrows).Ovate open spaces within completely formed MB spicules are also seen (red arrowheads). Low (D) and high (E) magnifications of demineralized and sectioned T.rex CB show fibrous matrix that is lightly stained. Dinosaur MB in low (F), and high (G) magnifications show much more intense staining (black arrows).Matrix is fibrous, but is penetrated by ovate forms within deeply staining bone (F, red arrows).White spaces in F are sectioning artifact, where tissue and embedding material have pulled away from bone. Scale bars as indicated." ;
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fabio:hasRepresentation <https://zenodo.org/record/3897588/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.3897590>
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dc:description "Figure 4. High iron diamine (HID) staining of demineralized CB and MB. (A) Low, and (B) high magnification of chicken femur showing deposition of darkly staining MB on pre-existing CB. (C) low, and (D) high magnification of ostrich femoral MB. Similar to the pattern seen using Alcian blue (Fig. 3), the distribution of MB is less distinct but can be chemically differentiated from pre-existing CB in a more mixed fashion. CB from T.rex femur in low (E) and high (F) magnification shows slight staining, as seen in modern samples, but staining is much more pronounced in T.rex MB in low (G) and higher (H) magnifications.Scale bars as indicated." ;
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fabio:hasRepresentation <https://zenodo.org/record/3897590/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.3897592>
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dc:description "Figure 5. Immunochemical staining of bone using monoclonal antibodies raised against the sulfated glycosaminoglycan keratan sulfate. (A,C,E,G,I,K,M,O) are overlay images showing tissue and localized binding; (B,D,F,H,},L,N,P) are fluorescent images using FITC label. Chicken CB (A,B) shows no binding; chicken MB (C,D) shows positive staining, with green fluorescent signal representing antibody-antigen complexes, arranged in globular clusters. Similarly, ostrich femoral CB (E,F) does not bind antibodies, but ostrich MB (G,H) is positive for binding using the same data collection parameters. T. rex CB (I,}), does not show evidence of localized antibody binding, but sections of isolated MB (K,L) show localized specific binding to antibodies in a globular pattern, as seen in the chicken.(M,N) cortical region of tarsometatarsus and (O,P) internal (medullary) region of chicken genetically diagnosed with avian osteopetrosis (Materials and Methods) exposed to anti-keratan sulfate antibodies. No binding is seen, using same data collection parameters." ;
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fabio:hasRepresentation <https://zenodo.org/record/3897592/files/figure.png> ;
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a fabio:Figure .
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<https://www.gbif.org/occurrence/2636228303>
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dwc:catalogNumber "MOR 1125" ;
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dwc:collectionCode "MOR" ;
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trt:gbifOccurrenceId "2636228303" ;
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a dwc:MaterialCitation .
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<https://www.gbif.org/occurrence/2636228301>
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dwc:catalogNumber "MOR 1125" ;
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dwc:collectionCode "MOR" ;
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trt:gbifOccurrenceId "2636228301" ;
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a dwc:MaterialCitation .
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<https://www.gbif.org/occurrence/2636228302>
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dwc:catalogNumber "MOR 1125" ;
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dwc:collectionCode "MOR" ;
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trt:gbifOccurrenceId "2636228302" ;
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a dwc:MaterialCitation .
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