206 lines
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206 lines
12 KiB
Turtle
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
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@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
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@prefix bibo: <http://purl.org/ontology/bibo/> .
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@prefix cito: <http://purl.org/spar/cito/> .
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@prefix dc: <http://purl.org/dc/elements/1.1/> .
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@prefix dwc: <http://rs.tdwg.org/dwc/terms/> .
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@prefix dwcFP: <http://filteredpush.org/ontologies/oa/dwcFP#> .
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@prefix fabio: <http://purl.org/spar/fabio/> .
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@prefix trt: <http://plazi.org/vocab/treatment#> .
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# Error: the treatment is lacking the taxon
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# Warning: Failed to output a material citation, could not create identifier
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# Warning: Failed to output a material citation, could not create identifier
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# Warning: Failed to output a material citation, could not create identifier
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# Warning: Failed to output a material citation, could not create identifier
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<http://treatment.plazi.org/id/038D427DF43CFFB89799AD9AFAA8F895>
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cito:cites <http://dx.doi.org/10.5281/zenodo.4265359>, <http://dx.doi.org/10.5281/zenodo.4265365>, <http://dx.doi.org/10.5281/zenodo.4265367>, <http://dx.doi.org/10.5281/zenodo.4265357>, <http://dx.doi.org/10.5281/zenodo.4265361>, <http://taxon-concept.plazi.org/id/Animalia/Agama_Daudin_1802>, <http://taxon-concept.plazi.org/id/Animalia/Agama_atra_Daudin_1802>, <http://taxon-concept.plazi.org/id/Animalia/Pachydactylus_rugosus_Smith_1849>, <http://taxon-concept.plazi.org/id/Animalia/Rhabdomys_pumilio_Sparrman_1784>, <http://taxon-concept.plazi.org/id/Animalia/Rhinolophus_arcuatus_Peters_1871>, <http://taxon-concept.plazi.org/id/Animalia/Rhinolophus_darlingi_Andersen_1905>, <http://taxon-concept.plazi.org/id/Animalia/Rhinolophus_eloquens_Andersen_1905>, <http://taxon-concept.plazi.org/id/Animalia/Rhinolophus_fumigatus_Ruppell_1842>, <http://taxon-concept.plazi.org/id/Animalia/Rhinolophus_hildebrandtii_Peters_1878> ;
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dc:creator "David S. Jacobs; Hassan Babiker; Anna Bastian; Teresa Kearney; Rowen van Eeden; Jacqueline M. Bishop" ;
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dc:title "Rhinolophus darlingi Andersen 1905" ;
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trt:citesTaxonName <http://taxon-name.plazi.org/id/Animalia/Rhinolophus_damarensis> ;
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trt:publishedIn <http://doi.org/10.5281/zenodo.4323878> ;
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a trt:Treatment .
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<http://doi.org/10.5281/zenodo.4323878>
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bibo:endPage "16" ;
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bibo:issue "12" ;
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bibo:journal "PLoS ONE" ;
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bibo:pubDate "2013-12-03" ;
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bibo:startPage "1" ;
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bibo:volume "8" ;
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dc:creator "David S. Jacobs; Hassan Babiker; Anna Bastian; Teresa Kearney; Rowen van Eeden; Jacqueline M. Bishop" ;
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dc:date "2013" ;
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dc:title "Phenotypic Convergence in Genetically Distinct Lineages of a Rhinolophus Species Complex (Mammalia, Chiroptera)" ;
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fabio:hasPart <http://dx.doi.org/10.5281/zenodo.4265359>, <http://dx.doi.org/10.5281/zenodo.4265365>, <http://dx.doi.org/10.5281/zenodo.4265367>, <http://dx.doi.org/10.5281/zenodo.4265357>, <http://dx.doi.org/10.5281/zenodo.4265361> ;
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a fabio:JournalArticle .
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<http://taxon-concept.plazi.org/id/Animalia/Rhinolophus_darlingi_Andersen_1905>
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dwc:authorityName "Andersen" ;
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dwc:authorityYear "1905" ;
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dwc:class "Mammalia" ;
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dwc:family "Rhinolophidae" ;
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dwc:genus "Rhinolophus" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Chiroptera" ;
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dwc:phylum "Chordata" ;
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dwc:rank "species" ;
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dwc:scientificNameAuthorship "Andersen, 1905" ;
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dwc:species "darlingi" ;
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trt:hasTaxonName <http://taxon-name.plazi.org/id/Animalia/Rhinolophus_darlingi> ;
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a dwcFP:TaxonConcept .
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<http://taxon-concept.plazi.org/id/Animalia/Rhinolophus_fumigatus_Ruppell_1842>
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dwc:authorityName "Ruppell" ;
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dwc:authorityYear "1842" ;
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dwc:class "Mammalia" ;
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dwc:family "Rhinolophidae" ;
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dwc:genus "Rhinolophus" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Chiroptera" ;
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dwc:phylum "Chordata" ;
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dwc:rank "species" ;
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dwc:scientificNameAuthorship "Ruppell, 1842" ;
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dwc:species "fumigatus" ;
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trt:hasTaxonName <http://taxon-name.plazi.org/id/Animalia/Rhinolophus_fumigatus> ;
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a dwcFP:TaxonConcept .
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<http://taxon-concept.plazi.org/id/Animalia/Rhinolophus_eloquens_Andersen_1905>
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dwc:authorityName "K. Andersen" ;
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dwc:authorityYear "1905" ;
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dwc:class "Mammalia" ;
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dwc:family "Rhinolophidae" ;
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dwc:genus "Rhinolophus" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Chiroptera" ;
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dwc:phylum "Chordata" ;
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dwc:rank "species" ;
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dwc:scientificNameAuthorship "Andersen, 1905" ;
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dwc:species "eloquens" ;
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trt:hasTaxonName <http://taxon-name.plazi.org/id/Animalia/Rhinolophus_eloquens> ;
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a dwcFP:TaxonConcept .
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<http://taxon-concept.plazi.org/id/Animalia/Rhinolophus_hildebrandtii_Peters_1878>
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dwc:authorityName "Peters" ;
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dwc:authorityYear "1878" ;
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dwc:class "Mammalia" ;
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dwc:family "Rhinolophidae" ;
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dwc:genus "Rhinolophus" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Chiroptera" ;
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dwc:phylum "Chordata" ;
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dwc:rank "species" ;
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dwc:scientificNameAuthorship "Peters, 1878" ;
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dwc:species "hildebrandtii" ;
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trt:hasTaxonName <http://taxon-name.plazi.org/id/Animalia/Rhinolophus_hildebrandtii> ;
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a dwcFP:TaxonConcept .
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<http://taxon-concept.plazi.org/id/Animalia/Rhinolophus_arcuatus_Peters_1871>
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dwc:authorityName "Peters" ;
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dwc:authorityYear "1871" ;
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dwc:class "Mammalia" ;
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dwc:family "Rhinolophidae" ;
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dwc:genus "Rhinolophus" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Chiroptera" ;
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dwc:phylum "Chordata" ;
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dwc:rank "species" ;
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dwc:scientificNameAuthorship "Peters, 1871" ;
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dwc:species "arcuatus" ;
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trt:hasTaxonName <http://taxon-name.plazi.org/id/Animalia/Rhinolophus_arcuatus> ;
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a dwcFP:TaxonConcept .
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<http://taxon-concept.plazi.org/id/Animalia/Rhabdomys_pumilio_Sparrman_1784>
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dwc:baseAuthorityName "Sparrman" ;
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dwc:baseAuthorityYear "1784" ;
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dwc:class "Mammalia" ;
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dwc:family "Muridae" ;
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dwc:genus "Rhabdomys" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Rodentia" ;
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dwc:phylum "Chordata" ;
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dwc:rank "species" ;
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dwc:scientificNameAuthorship "(Sparrman, 1784)" ;
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dwc:species "pumilio" ;
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trt:hasTaxonName <http://taxon-name.plazi.org/id/Animalia/Rhabdomys_pumilio> ;
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a dwcFP:TaxonConcept .
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<http://taxon-concept.plazi.org/id/Animalia/Agama_Daudin_1802>
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dwc:authorityName "Daudin" ;
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dwc:authorityYear "1802" ;
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dwc:class "Reptilia" ;
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dwc:family "Agamidae" ;
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dwc:genus "Agama" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Squamata" ;
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dwc:phylum "Chordata" ;
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dwc:rank "genus" ;
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dwc:scientificNameAuthorship "Daudin, 1802" ;
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trt:hasTaxonName <http://taxon-name.plazi.org/id/Animalia/Agama> ;
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a dwcFP:TaxonConcept .
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<http://taxon-concept.plazi.org/id/Animalia/Agama_atra_Daudin_1802>
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dwc:authorityName "Daudin" ;
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dwc:authorityYear "1802" ;
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dwc:class "Reptilia" ;
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dwc:family "Agamidae" ;
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dwc:genus "Agama" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Squamata" ;
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dwc:phylum "Chordata" ;
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dwc:rank "species" ;
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dwc:scientificNameAuthorship "Daudin, 1802" ;
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dwc:species "atra" ;
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trt:hasTaxonName <http://taxon-name.plazi.org/id/Animalia/Agama_atra> ;
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a dwcFP:TaxonConcept .
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<http://taxon-concept.plazi.org/id/Animalia/Pachydactylus_rugosus_Smith_1849>
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dwc:authorityName "Smith" ;
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dwc:authorityYear "1849" ;
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dwc:class "Reptilia" ;
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dwc:family "Gekkonidae" ;
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dwc:genus "Pachydactylus" ;
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dwc:kingdom "Animalia" ;
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dwc:order "Squamata" ;
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dwc:phylum "Chordata" ;
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dwc:rank "species" ;
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dwc:scientificNameAuthorship "Smith, 1849" ;
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dwc:species "rugosus" ;
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trt:hasTaxonName <http://taxon-name.plazi.org/id/Animalia/Pachydactylus_rugosus> ;
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a dwcFP:TaxonConcept .
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<http://dx.doi.org/10.5281/zenodo.4265359>
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dc:description "Figure 2. Bayesian consensus topology of Rhinolophus spp. based on cytochrome b. Values above nodes indicate Bayesian posterior probabilities (> 0.80) and below nodes report parsimony bootstrap support. Branch lengths are proportional to average number of substitutions per site. Divergence times (millions years ago, Mya) were estimated for three nodes of interest: node A = 4.8 Mya (95% HPD; 2.69–7.52), B = 9.68 Mya (95% HPD; 5.87–10.04), C = 10.51 Mya (95% HPD; 6.65–15.43). The split between the Hipposideridae (outgroup) and the Rhinolophidae together with fossil dates for R. ferrumequinum were used as calibration points; calibration points are indicated on the tree with an asterisk *. Sequences from the type localities for R. darlingi darlingi (TM2476) and R. darlingi damarensis (TM9474) are indicated on the tree in bold. The eastern R. darlingi darlingi subspecies forms a single clade together with R. fumigatus, R. eloquens and R. hildebrandti (blue) while R. damarensis damarensis, distributed in the western region of southern Africa, is composed of two very well supported clades that subdivide into northern and southern lineages (red) that diverged in the late Miocene. doi: 10.1371/journal. pone.0082614.g002" ;
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fabio:hasRepresentation <https://zenodo.org/record/4265359/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.4265365>
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dc:description "Figure 5. Probability of occurrence for A) R. darlingi and B) R. damarensis in southern Africa. The predictions (Low-High) show a suitability gradient from 0–1 based on environmental suitability where 0 (low) indicates a zero probability of occurrence and 1 (high) indicates maximum probability of occurrence. White circles indicate locality records used for modelling the species. Dotted white triangles indicate locality records from where DNA sequences were obtained. Variables used in the final model include annual mean temperature, isothermality, temperature seasonality, temperature annual range, mean temperature of the wettest quarter, mean temperature of the driest quarter, mean temperature of the warmest quarter, mean temperature of the coldest quarter, annual precipitation, precipitation seasonality, precipitation of the wettest quarter, precipitation of the driest quarter, and precipitation of the coldest quarter." ;
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fabio:hasRepresentation <https://zenodo.org/record/4265365/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.4265367>
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dc:description "Figure 6. The log response curves for R. darlingi. A) R. darlingi; (i) annual precipitation, (ii) precipitation of the wettest quarter, (iii) temperature seasonality when all locality records were used to build the model (temperature seasonality (Coefficient of Variation) is the standard deviation of the monthly temperature estimates expressed as a percentage of the mean of those estimates (i.e., the annual mean); and B) R. damarensis; (i) annual precipitation, (ii), precipitation of the wettest quarter, and (iii) mean temperature of the wettest quarter when all locality records were used to build the model. doi: 10.1371/journal. pone.0082614.g006" ;
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fabio:hasRepresentation <https://zenodo.org/record/4265367/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.4265357>
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dc:description "Figure 1. The distribution of R. darlingi (shaded areas) and sample localities (symbols). Squares = eastern R. darlingi; Circles (southern lineage) and triangles (northern lineage) = western R. darlingi (R. damarensis; Fig. 2). TM 9474 = holotype R. d. damarensis Namibia), TM 2476 = holotype of R. d. barbetonensis South Africa. doi: 10.1371/journal.pone.0082614.g001" ;
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fabio:hasRepresentation <https://zenodo.org/record/4265357/files/figure.png> ;
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a fabio:Figure .
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<http://dx.doi.org/10.5281/zenodo.4265361>
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dc:description "Figure 3. Plot of canonical scores extracted by Discriminant Function Analysis from 24 skull and external parameters. Species abbreviations are the same as those in Table S1 (Supporting Information). Museum accession numbers relate to holotypes (See legend of Figure 1). doi: 10.1371/journal.pone.0082614.g003" ;
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fabio:hasRepresentation <https://zenodo.org/record/4265361/files/figure.png> ;
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a fabio:Figure .
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